PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626947.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 444aa    MW: 49982.6 Da    PI: 6.4616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l ++v+++G g+W+++ +  g+ R++k+c++rw ++l
   XP_013626947.1 19 KGPWTTKEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCRLRWANHL 66
                     79******************************99**********9986 PP

2Myb_DNA-binding48.71.8e-1572115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+++++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_013626947.1  72 KGSFSPDEEKIIIELHAKMGNK-WARMASQLP-GRTDNEIKNYWNT 115
                      799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1231466IPR017930Myb domain
SuperFamilySSF466891.72E-2916113IPR009057Homeodomain-like
SMARTSM007173.9E-141868IPR001005SANT/Myb domain
PfamPF002498.8E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-232073IPR009057Homeodomain-like
CDDcd001676.49E-112166No hitNo description
PROSITE profilePS5129424.64967121IPR017930Myb domain
SMARTSM007177.1E-1671119IPR001005SANT/Myb domain
PfamPF002491.1E-1472115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2574120IPR009057Homeodomain-like
CDDcd001672.69E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MHGGGETTAT ATEARGLKKG PWTTKEDAIL TEYVRKHGEG NWNAVQKNSG LLRCGKSCRL  60
RWANHLRPNL KKGSFSPDEE KIIIELHAKM GNKWARMASQ LPGRTDNEIK NYWNTRMKRR  120
QRAGLPLYPH EIHHQGIDND DEFEFNSFQF SNQDHSNHQN MIQYTNSSNI PSPSSSFSSS  180
SSQPQKNMCL DPLIYTNPGL DHIPATPMNT HMFSLYNNSL ENENNQFGFS LPLSSSSPSN  240
EFCTINKKDI DAKSCSSLLM RDHEMRPSSF PLGLDNTVLE LPSVQIPTHF RSYNTIIDNG  300
VHLYPPAGNS GLLDTVLEES RALSRGGIFK DVTVSSSSLC EDQDKRVEID FENRLIDHLN  360
SSHQSSSETT PNLYKRYNEP TIVKTTMDDD DGILLSFINN FPSTTPLPDD WYRVTEIQTE  420
ALTSGILIGN HQGNSRLEPQ KAPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30171205107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895360.0AC189536.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003D18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626947.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A078JJT30.0A0A078JJT3_BRANA; BnaCnng51960D protein
TrEMBLA0A0D3B4J10.0A0A0D3B4J1_BRAOL; Uncharacterized protein
STRINGBra022888.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.10.0myb domain protein 101